Automated Multi-Locus Species Tree

Upload sequence(s) for automatic generation of species phylogeny with reference organisms

Start Analysis » View example »


Rapid ANI estimation

Netork depicting ani distances

Nearest reference organisms (NCBI RefSeq) are identified and collated

MLST gene selection

Selection of mlst genes

Single copy genes with dN/dS values < 1 are identified and prioritized

Tree building

Example tree output

Phylogeny is built using all MLST genes from query and reference organisms using either a concatenated gene or coalescent tree method.