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Automated Multi-Locus Species Tree

Upload sequence(s) for automatic generation of species phylogeny with reference organisms

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Overview

Rapid ANI estimation

Netork depicting ani distances

Nearest reference organisms (NCBI RefSeq) are identified and collated

MLST gene selection

Selection of mlst genes

Single copy genes with dN/dS values < 1 are identified and prioritized

Tree building

Example tree output

Phylogeny is built using all MLST genes from query and reference organisms using either a concatenated gene or coalescent tree method.